J5_7M4U_003

3D structure

PDB id

7M4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 30S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7M4U|1|a|A|105, 7M4U|1|a|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7M4U_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1172

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7M4U|1|a|C|60
7M4U|1|a|A|61
7M4U|1|a|A|62
7M4U|1|a|G|63
*
7M4U|1|a|C|102
7M4U|1|a|G|103
7M4U|1|a|G|104
7M4U|1|a|A|105
7M4U|1|a|C|106
7M4U|1|a|G|107
7M4U|1|a|G|108
7M4U|1|a|G|109
*
7M4U|1|a|C|310
7M4U|1|a|A|311
7M4U|1|a|C|312
*
7M4U|1|a|G|333
7M4U|1|a|A|334
7M4U|1|a|C|335
*
7M4U|1|a|G|346
7M4U|1|a|G|347
7M4U|1|a|C|348
7M4U|1|a|A|349
7M4U|1|a|G|350

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20