J5_7M4Z_001

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7M4Z|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7M4Z_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1121

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7M4Z|1|A|C|54
7M4Z|1|A|G|55
7M4Z|1|A|A|56
7M4Z|1|A|U|57
7M4Z|1|A|G|58
7M4Z|1|A|A|59
7M4Z|1|A|A|60
7M4Z|1|A|A|61
*
7M4Z|1|A|U|123
7M4Z|1|A|G|124
7M4Z|1|A|A|125
7M4Z|1|A|A|126
7M4Z|1|A|U|127
7M4Z|1|A|G|128
*
7M4Z|1|A|C|137
7M4Z|1|A|A|138
*
7M4Z|1|A|U|155
7M4Z|1|A|A|156
7M4Z|1|A|U|157
*
7M4Z|1|A|A|183
7M4Z|1|A|G|184
7M4Z|1|A|G|185

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34