3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GCC*GCAGAUC
Length
24 nucleotides
Bulged bases
7MDZ|1|5|C|2289, 7MDZ|1|5|U|2350
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7MDZ_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.0717
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7MDZ|1|5|G|1335
7MDZ|1|5|G|1336
7MDZ|1|5|A|1337
7MDZ|1|5|G|1338
7MDZ|1|5|U|1339
7MDZ|1|5|C|1340
*
7MDZ|1|5|G|1516
7MDZ|1|5|G|1517
7MDZ|1|5|A|1518
7MDZ|1|5|C|1519
*
7MDZ|1|5|G|1658
7MDZ|1|5|U|1659
7MDZ|1|5|U|1660
7MDZ|1|5|C|1661
*
7MDZ|1|5|G|2288
7MDZ|1|5|C|2289
7MDZ|1|5|C|2290
*
7MDZ|1|5|G|2345
7MDZ|1|5|C|2346
7MDZ|1|5|A|2347
7MDZ|1|5|G|2348
7MDZ|1|5|A|2349
7MDZ|1|5|U|2350
7MDZ|1|5|C|2351

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4
Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain a
60S ribosomal protein L27a
Chain e
eL32
Chain r
eL28

Coloring options:


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