J5_7MDZ_005
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7MDZ|1|5|G|3922, 7MDZ|1|5|A|4376, 7MDZ|1|5|G|4377, 7MDZ|1|5|A|4378, 7MDZ|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MDZ_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3176
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MDZ|1|5|U|3920
7MDZ|1|5|U|3921
7MDZ|1|5|G|3922
7MDZ|1|5|A|3923
*
7MDZ|1|5|U|4188
7MDZ|1|5|U|4189
7MDZ|1|5|U|4190
7MDZ|1|5|G|4191
*
7MDZ|1|5|C|4204
7MDZ|1|5|A|4205
*
7MDZ|1|5|U|4227
7MDZ|1|5|G|4228
*
7MDZ|1|5|C|4375
7MDZ|1|5|A|4376
7MDZ|1|5|G|4377
7MDZ|1|5|A|4378
7MDZ|1|5|A|4379
7MDZ|1|5|A|4380
7MDZ|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- eL42
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