J5_7MPI_002
3D structure
- PDB id
- 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 7MPI|1|A1|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MPI_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.057
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7MPI|1|A1|G|658
7MPI|1|A1|G|659
7MPI|1|A1|A|660
7MPI|1|A1|G|661
7MPI|1|A1|U|662
7MPI|1|A1|OMC|663
*
7MPI|1|A1|G|799
7MPI|1|A1|G|800
7MPI|1|A1|A|801
7MPI|1|A1|C|802
*
7MPI|1|A1|G|941
7MPI|1|A1|U|942
7MPI|1|A1|U|943
7MPI|1|A1|C|944
*
7MPI|1|A1|G|1375
7MPI|1|A1|C|1376
*
7MPI|1|A1|G|1431
7MPI|1|A1|C|1432
7MPI|1|A1|A|1433
7MPI|1|A1|G|1434
7MPI|1|A1|A|1435
7MPI|1|A1|U|1436
7MPI|1|A1|OMC|1437
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- 60S ribosomal protein L4-A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- 60S ribosomal protein L32
Coloring options: