Loop J5_7MPI

3D structure

PDB id: 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å

Loop

Sequence: AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 7MPI|1|A1|A|2404, 7MPI|1|A1|A|2817, 7MPI|1|A1|U|2873, 7MPI|1|A1|G|2874, 7MPI|1|A1|U|2875, 7MPI|1|A1|U|2978, 7MPI|1|A1|U|2979
QA status: Modified nucleotides: OMG, 5MC

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7MPI|1|A1|A|2399
7MPI|1|A1|G|2400
7MPI|1|A1|A|2401
7MPI|1|A1|A|2402
7MPI|1|A1|G|2403
7MPI|1|A1|A|2404
7MPI|1|A1|C|2405
7MPI|1|A1|C|2406
*
7MPI|1|A1|OMG|2815
7MPI|1|A1|G|2816
7MPI|1|A1|A|2817
7MPI|1|A1|U|2818
7MPI|1|A1|A|2819
7MPI|1|A1|A|2820
7MPI|1|A1|C|2821
7MPI|1|A1|U|2822
7MPI|1|A1|G|2823
*
7MPI|1|A1|C|2867
7MPI|1|A1|U|2868
7MPI|1|A1|U|2869
7MPI|1|A1|5MC|2870
7MPI|1|A1|G|2871
7MPI|1|A1|A|2872
7MPI|1|A1|U|2873
7MPI|1|A1|G|2874
7MPI|1|A1|U|2875
7MPI|1|A1|C|2876
*
7MPI|1|A1|G|2951
7MPI|1|A1|G|2952
7MPI|1|A1|U|2953
7MPI|1|A1|U|2954
7MPI|1|A1|U|2955
7MPI|1|A1|A|2956
7MPI|1|A1|G|2957
*
7MPI|1|A1|U|2975
7MPI|1|A1|A|2976
7MPI|1|A1|G|2977
7MPI|1|A1|U|2978
7MPI|1|A1|U|2979
7MPI|1|A1|U|2980

Current chains

Chain A1: 25S rRNA

Nearby chains

Chain AA: 60S ribosomal protein L2-A
Chain AB: 60S ribosomal protein L3
Chain AC: 60S ribosomal protein L4-A
Chain AP: 60S ribosomal protein L17-A
Chain Ab: 60S ribosomal protein L29

J5_7MPI_005