J5_7MPI_007

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|B5|C|31
7MPI|1|B5|U|32
7MPI|1|B5|U|33
7MPI|1|B5|G|34
7MPI|1|B5|U|35
*
7MPI|1|B5|A|473
7MPI|1|B5|A|474
7MPI|1|B5|A|475
7MPI|1|B5|U|476
7MPI|1|B5|A|477
7MPI|1|B5|A|478
7MPI|1|B5|C|479
*
7MPI|1|B5|G|509
7MPI|1|B5|G|510
7MPI|1|B5|A|511
7MPI|1|B5|A|512
7MPI|1|B5|U|513
7MPI|1|B5|G|514
7MPI|1|B5|A|515
7MPI|1|B5|G|516
*
7MPI|1|B5|C|536
7MPI|1|B5|G|537
7MPI|1|B5|A|538
7MPI|1|B5|G|539
7MPI|1|B5|G|540
7MPI|1|B5|A2M|541
7MPI|1|B5|A|542
7MPI|1|B5|C|543
7MPI|1|B5|A|544
7MPI|1|B5|A|545
7MPI|1|B5|U|546
*
7MPI|1|B5|A|592
7MPI|1|B5|U|593
7MPI|1|B5|A|594
7MPI|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A