J5_7MPJ_001
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7MPJ|1|A4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MPJ_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0614
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7MPJ|1|A1|A|20
7MPJ|1|A1|G|21
7MPJ|1|A1|G|22
*
7MPJ|1|A4|C|35
7MPJ|1|A4|G|36
7MPJ|1|A4|A|37
7MPJ|1|A4|U|38
7MPJ|1|A4|G|39
7MPJ|1|A4|A|40
7MPJ|1|A4|A|41
7MPJ|1|A4|G|42
*
7MPJ|1|A4|U|102
7MPJ|1|A4|G|103
7MPJ|1|A4|A|104
7MPJ|1|A4|A|105
7MPJ|1|A4|C|106
7MPJ|1|A4|G|107
*
7MPJ|1|A4|C|115
7MPJ|1|A4|G|116
*
7MPJ|1|A4|C|137
7MPJ|1|A4|A|138
7MPJ|1|A4|U|139
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AN
- 60S ribosomal protein L15-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: