J5_7MPJ_002
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 7MPJ|1|A1|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MPJ_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0466
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|A1|G|658
7MPJ|1|A1|G|659
7MPJ|1|A1|A|660
7MPJ|1|A1|G|661
7MPJ|1|A1|U|662
7MPJ|1|A1|OMC|663
*
7MPJ|1|A1|G|799
7MPJ|1|A1|G|800
7MPJ|1|A1|A|801
7MPJ|1|A1|C|802
*
7MPJ|1|A1|G|941
7MPJ|1|A1|U|942
7MPJ|1|A1|U|943
7MPJ|1|A1|C|944
*
7MPJ|1|A1|G|1375
7MPJ|1|A1|C|1376
*
7MPJ|1|A1|G|1431
7MPJ|1|A1|C|1432
7MPJ|1|A1|A|1433
7MPJ|1|A1|G|1434
7MPJ|1|A1|A|1435
7MPJ|1|A1|U|1436
7MPJ|1|A1|OMC|1437
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- 60S ribosomal protein L4-A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- 60S ribosomal protein L32
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