J5_7MQ9_002

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

39 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQ9|1|L1|C|30
7MQ9|1|L1|U|31
7MQ9|1|L1|U|32
7MQ9|1|L1|G|33
7MQ9|1|L1|U|34
7MQ9|1|L1|C|35
7MQ9|1|L1|U|36
*
7MQ9|1|L1|A|519
7MQ9|1|L1|A|520
7MQ9|1|L1|A|521
7MQ9|1|L1|A|522
7MQ9|1|L1|A|523
7MQ9|1|L1|U|524
7MQ9|1|L1|A|525
7MQ9|1|L1|A|526
7MQ9|1|L1|C|527
*
7MQ9|1|L1|G|558
7MQ9|1|L1|G|559
7MQ9|1|L1|A|560
7MQ9|1|L1|A|561
7MQ9|1|L1|U|562
7MQ9|1|L1|G|563
7MQ9|1|L1|A|564
7MQ9|1|L1|G|565
*
7MQ9|1|L1|C|585
7MQ9|1|L1|G|586
7MQ9|1|L1|A|587
7MQ9|1|L1|G|588
7MQ9|1|L1|G|589
7MQ9|1|L1|A|590
7MQ9|1|L1|U|591
7MQ9|1|L1|C|592
7MQ9|1|L1|C|593
7MQ9|1|L1|A|594
7MQ9|1|L1|U|595
*
7MQ9|1|L1|A|641
7MQ9|1|L1|U|642
7MQ9|1|L1|A|643
7MQ9|1|L1|G|644

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1 homolog

Chain SR

40S ribosomal protein S23

Chain SY

Probable U3 small nucleolar RNA-associated protein 11