J5_7MQA_003
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7MQA|1|L1|A|92, 7MQA|1|L1|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7MQA_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1264
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7MQA|1|L1|C|53
7MQA|1|L1|A|54
7MQA|1|L1|U|55
7MQA|1|L1|G|56
*
7MQA|1|L1|C|89
7MQA|1|L1|G|90
7MQA|1|L1|A|91
7MQA|1|L1|A|92
7MQA|1|L1|PSU|93
7MQA|1|L1|G|94
7MQA|1|L1|G|95
7MQA|1|L1|C|96
*
7MQA|1|L1|G|434
7MQA|1|L1|A|435
7MQA|1|L1|OMG|436
*
7MQA|1|L1|C|457
7MQA|1|L1|A|458
7MQA|1|L1|C|459
*
7MQA|1|L1|G|470
7MQA|1|L1|G|471
7MQA|1|L1|C|472
7MQA|1|L1|A|473
7MQA|1|L1|G|474
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4, X isoform
- Chain L6
- 40S ribosomal protein S6
- Chain L8
- 40S ribosomal protein S8
- Chain L9
- 40S ribosomal protein S9
- Chain LF
- 40S ribosomal protein S24
- Chain NS
- Probable ATP-dependent RNA helicase DHX37
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