J5_7MT3_010

3D structure

PDB id

7MT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70S with P/E tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7MT3|1|a|A|104, 7MT3|1|a|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MT3_010 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0882

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7MT3|1|a|C|61
7MT3|1|a|A|62
7MT3|1|a|A|63
7MT3|1|a|G|64
*
7MT3|1|a|C|101
7MT3|1|a|G|102
7MT3|1|a|A|103
7MT3|1|a|A|104
7MT3|1|a|C|105
7MT3|1|a|G|106
7MT3|1|a|G|107
7MT3|1|a|G|108
*
7MT3|1|a|C|313
7MT3|1|a|A|314
7MT3|1|a|C|315
*
7MT3|1|a|G|336
7MT3|1|a|A|337
7MT3|1|a|C|338
*
7MT3|1|a|G|349
7MT3|1|a|G|350
7MT3|1|a|C|351
7MT3|1|a|A|352
7MT3|1|a|G|353

Current chains

Chain a

16S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20