J5_7MT3_011

3D structure

PDB id

7MT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70S with P/E tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

7MT3|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MT3_011 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.103

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7MT3|1|A|C|47
7MT3|1|A|G|48
7MT3|1|A|A|49
7MT3|1|A|U|50
7MT3|1|A|G|51
7MT3|1|A|A|52
7MT3|1|A|A|53
7MT3|1|A|G|54
*
7MT3|1|A|C|116
7MT3|1|A|G|117
7MT3|1|A|A|118
7MT3|1|A|A|119
7MT3|1|A|U|120
7MT3|1|A|G|121
*
7MT3|1|A|C|130
7MT3|1|A|A|131
*
7MT3|1|A|U|150
7MT3|1|A|A|151
7MT3|1|A|C|152
*
7MT3|1|A|G|178
7MT3|1|A|A|179
7MT3|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23