J5_7N2C_002

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7N2C_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1078

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7N2C|1|16|C|36
7N2C|1|16|U|37
7N2C|1|16|G|38
7N2C|1|16|G|39
*
7N2C|1|16|C|403
7N2C|1|16|G|404
7N2C|1|16|U|405
7N2C|1|16|G|406
*
7N2C|1|16|C|436
7N2C|1|16|U|437
7N2C|1|16|U|438
7N2C|1|16|U|439
7N2C|1|16|C|440
7N2C|1|16|A|441
7N2C|1|16|G|442
*
7N2C|1|16|C|492
7N2C|1|16|A|493
7N2C|1|16|G|494
7N2C|1|16|A|495
7N2C|1|16|A|496
7N2C|1|16|G|497
7N2C|1|16|A|498
7N2C|1|16|A|499
7N2C|1|16|G|500
*
7N2C|1|16|C|545
7N2C|1|16|A|546
7N2C|1|16|A|547
7N2C|1|16|G|548

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

30S ribosomal protein S12