3D structure

PDB id
7N2C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
7N2C|1|23|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7N2C_004 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0539
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7N2C|1|23|C|47
7N2C|1|23|G|48
7N2C|1|23|A|49
7N2C|1|23|U|50
7N2C|1|23|G|51
7N2C|1|23|A|52
7N2C|1|23|A|53
7N2C|1|23|G|54
*
7N2C|1|23|C|116
7N2C|1|23|G|117
7N2C|1|23|A|118
7N2C|1|23|A|119
7N2C|1|23|U|120
7N2C|1|23|G|121
*
7N2C|1|23|C|130
7N2C|1|23|A|131
*
7N2C|1|23|U|148
7N2C|1|23|A|149
7N2C|1|23|U|150
*
7N2C|1|23|A|176
7N2C|1|23|G|177
7N2C|1|23|G|178

Current chains

Chain 23
23S rRNA

Nearby chains

Chain Lh
50S ribosomal protein L34

Coloring options:


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