J5_7NBU_005

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

7NBU|1|a|A|532, 7NBU|1|a|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NBU_005 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.0636

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NBU|1|a|C|531
7NBU|1|a|A|532
7NBU|1|a|G|533
*
7NBU|1|a|C|560
7NBU|1|a|G|561
7NBU|1|a|U|562
7NBU|1|a|A|563
7NBU|1|a|C|564
*
7NBU|1|a|G|577
7NBU|1|a|G|578
7NBU|1|a|G|579
*
7NBU|1|a|C|1261
7NBU|1|a|A|1262
*
7NBU|1|a|U|2017
7NBU|1|a|G|2018

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32