J5_7NHK_003
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGUGC*GAA*UA*UU
- Length
- 15 nucleotides
- Bulged bases
- 7NHK|1|A|A|570, 7NHK|1|A|U|598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHK_003 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0901
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NHK|1|A|A|569
7NHK|1|A|A|570
7NHK|1|A|G|571
*
7NHK|1|A|C|596
7NHK|1|A|G|597
7NHK|1|A|U|598
7NHK|1|A|G|599
7NHK|1|A|C|600
*
7NHK|1|A|G|613
7NHK|1|A|A|614
7NHK|1|A|A|615
*
7NHK|1|A|U|1297
7NHK|1|A|A|1298
*
7NHK|1|A|U|2030
7NHK|1|A|U|2031
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain I
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L13
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
- Chain V
- 50S ribosomal protein L22
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