J5_7NHL_005
3D structure
- PDB id
- 7NHL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7NHL|1|A|G|1785, 7NHL|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHL_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.095
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7NHL|1|A|G|1718
7NHL|1|A|C|1719
7NHL|1|A|A|1720
7NHL|1|A|A|1721
7NHL|1|A|A|1722
7NHL|1|A|A|1723
7NHL|1|A|U|1724
7NHL|1|A|G|1725
7NHL|1|A|A|1726
*
7NHL|1|A|U|1750
7NHL|1|A|G|1751
*
7NHL|1|A|C|1778
7NHL|1|A|C|1779
*
7NHL|1|A|G|1783
7NHL|1|A|U|1784
7NHL|1|A|G|1785
7NHL|1|A|A|1786
7NHL|1|A|A|1787
7NHL|1|A|U|1788
7NHL|1|A|A|1789
7NHL|1|A|G|1790
7NHL|1|A|G|1791
*
7NHL|1|A|C|2015
7NHL|1|A|A|2016
7NHL|1|A|C|2017
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: