J5_7NHM_005

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

7NHM|1|A|G|1785, 7NHM|1|A|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NHM_005 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.0902

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|G|1718
7NHM|1|A|C|1719
7NHM|1|A|A|1720
7NHM|1|A|A|1721
7NHM|1|A|A|1722
7NHM|1|A|A|1723
7NHM|1|A|U|1724
7NHM|1|A|G|1725
7NHM|1|A|A|1726
*
7NHM|1|A|U|1750
7NHM|1|A|G|1751
*
7NHM|1|A|C|1778
7NHM|1|A|C|1779
*
7NHM|1|A|G|1783
7NHM|1|A|U|1784
7NHM|1|A|G|1785
7NHM|1|A|A|1786
7NHM|1|A|A|1787
7NHM|1|A|U|1788
7NHM|1|A|A|1789
7NHM|1|A|G|1790
7NHM|1|A|G|1791
*
7NHM|1|A|C|2015
7NHM|1|A|A|2016
7NHM|1|A|C|2017

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14

Chain S

50S ribosomal protein L19

Chain a

Small subunit ribosomal RNA; SSU rRNA