J5_7NRC_003

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

7NRC|1|LA|U|719, 7NRC|1|LA|A|784, 7NRC|1|LA|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NRC_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0826

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_23272.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|C|675
7NRC|1|LA|G|676
7NRC|1|LA|A|677
7NRC|1|LA|G|678
*
7NRC|1|LA|C|702
7NRC|1|LA|G|703
7NRC|1|LA|U|704
7NRC|1|LA|A|705
7NRC|1|LA|A|706
*
7NRC|1|LA|U|713
7NRC|1|LA|G|714
7NRC|1|LA|A|715
7NRC|1|LA|A|716
7NRC|1|LA|C|717
7NRC|1|LA|G|718
7NRC|1|LA|U|719
7NRC|1|LA|A|720
7NRC|1|LA|G|721
*
7NRC|1|LA|C|749
7NRC|1|LA|G|750
7NRC|1|LA|A|751
*
7NRC|1|LA|U|782
7NRC|1|LA|A|783
7NRC|1|LA|A|784
7NRC|1|LA|G|785
7NRC|1|LA|A|786
7NRC|1|LA|G|787

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain LN

60S ribosomal protein L13-A

Chain LS

60S ribosomal protein L18-A

Chain Lc

60S ribosomal protein L28

Chain Ld

60S ribosomal protein L29

Chain Lk

60S ribosomal protein L36-A