J5_7NRD_004
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7NRD|1|LA|G|2116, 7NRD|1|LA|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NRD_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1247
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|G|1906
7NRD|1|LA|C|1907
7NRD|1|LA|A|1908
7NRD|1|LA|A|1909
7NRD|1|LA|A|1910
7NRD|1|LA|A|1911
7NRD|1|LA|U|1912
7NRD|1|LA|A|1913
7NRD|1|LA|G|1914
*
7NRD|1|LA|U|1938
7NRD|1|LA|G|1939
*
7NRD|1|LA|U|2109
7NRD|1|LA|G|2110
*
7NRD|1|LA|C|2114
7NRD|1|LA|G|2115
7NRD|1|LA|G|2116
7NRD|1|LA|A|2117
7NRD|1|LA|C|2118
7NRD|1|LA|A|2119
7NRD|1|LA|A|2120
7NRD|1|LA|G|2121
7NRD|1|LA|G|2122
*
7NRD|1|LA|C|2331
7NRD|1|LA|A|2332
7NRD|1|LA|C|2333
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LT
- 60S ribosomal protein L19-A
- Chain LX
- 60S ribosomal protein L23-A
- Chain LY
- 60S ribosomal protein L24-A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: