J5_7NRD_005
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7NRD|1|LA|A|2404, 7NRD|1|LA|A|2817, 7NRD|1|LA|G|2874, 7NRD|1|LA|U|2875, 7NRD|1|LA|U|2978, 7NRD|1|LA|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|A|2399
7NRD|1|LA|G|2400
7NRD|1|LA|A|2401
7NRD|1|LA|A|2402
7NRD|1|LA|G|2403
7NRD|1|LA|A|2404
7NRD|1|LA|C|2405
7NRD|1|LA|C|2406
*
7NRD|1|LA|G|2815
7NRD|1|LA|G|2816
7NRD|1|LA|A|2817
7NRD|1|LA|U|2818
7NRD|1|LA|A|2819
7NRD|1|LA|A|2820
7NRD|1|LA|C|2821
7NRD|1|LA|U|2822
7NRD|1|LA|G|2823
*
7NRD|1|LA|C|2867
7NRD|1|LA|U|2868
7NRD|1|LA|U|2869
7NRD|1|LA|C|2870
7NRD|1|LA|G|2871
7NRD|1|LA|A|2872
7NRD|1|LA|U|2873
7NRD|1|LA|G|2874
7NRD|1|LA|U|2875
7NRD|1|LA|C|2876
*
7NRD|1|LA|G|2951
7NRD|1|LA|G|2952
7NRD|1|LA|U|2953
7NRD|1|LA|U|2954
7NRD|1|LA|U|2955
7NRD|1|LA|A|2956
7NRD|1|LA|G|2957
*
7NRD|1|LA|U|2975
7NRD|1|LA|A|2976
7NRD|1|LA|G|2977
7NRD|1|LA|U|2978
7NRD|1|LA|U|2979
7NRD|1|LA|U|2980
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LE
- 60S ribosomal protein L3
- Chain LF
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L10
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Sn
- Transfer RNA; tRNA
Coloring options: