J5_7NRD_007
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 7NRD|1|S2|A|541, 7NRD|1|S2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|S2|C|31
7NRD|1|S2|U|32
7NRD|1|S2|U|33
7NRD|1|S2|G|34
7NRD|1|S2|U|35
*
7NRD|1|S2|A|473
7NRD|1|S2|A|474
7NRD|1|S2|A|475
7NRD|1|S2|U|476
7NRD|1|S2|A|477
7NRD|1|S2|A|478
7NRD|1|S2|C|479
*
7NRD|1|S2|G|509
7NRD|1|S2|G|510
7NRD|1|S2|A|511
7NRD|1|S2|A|512
7NRD|1|S2|U|513
7NRD|1|S2|G|514
7NRD|1|S2|A|515
7NRD|1|S2|G|516
*
7NRD|1|S2|C|536
7NRD|1|S2|G|537
7NRD|1|S2|A|538
7NRD|1|S2|G|539
7NRD|1|S2|G|540
7NRD|1|S2|A|541
7NRD|1|S2|A|542
7NRD|1|S2|C|543
7NRD|1|S2|A|544
7NRD|1|S2|A|545
7NRD|1|S2|U|546
*
7NRD|1|S2|A|592
7NRD|1|S2|U|593
7NRD|1|S2|A|594
7NRD|1|S2|G|595
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain Sh
- Multiprotein-bridging factor 1
Coloring options: