J5_7NRD_009
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
- Length
- 44 nucleotides
- Bulged bases
- 7NRD|1|S2|U|128, 7NRD|1|S2|C|130, 7NRD|1|S2|U|132, 7NRD|1|S2|U|134, 7NRD|1|S2|A|135, 7NRD|1|S2|A|138, 7NRD|1|S2|A|140, 7NRD|1|S2|U|178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|S2|A|124
7NRD|1|S2|U|125
7NRD|1|S2|A|126
7NRD|1|S2|G|127
7NRD|1|S2|U|128
7NRD|1|S2|U|129
7NRD|1|S2|C|130
7NRD|1|S2|C|131
7NRD|1|S2|U|132
7NRD|1|S2|U|133
7NRD|1|S2|U|134
7NRD|1|S2|A|135
7NRD|1|S2|C|136
7NRD|1|S2|U|137
7NRD|1|S2|A|138
7NRD|1|S2|C|139
7NRD|1|S2|A|140
7NRD|1|S2|U|141
7NRD|1|S2|G|142
7NRD|1|S2|G|143
*
7NRD|1|S2|C|172
7NRD|1|S2|A|173
7NRD|1|S2|U|174
7NRD|1|S2|G|175
7NRD|1|S2|C|176
7NRD|1|S2|U|177
7NRD|1|S2|U|178
7NRD|1|S2|A|179
7NRD|1|S2|A|180
7NRD|1|S2|A|181
7NRD|1|S2|A|182
*
7NRD|1|S2|U|203
7NRD|1|S2|G|204
*
7NRD|1|S2|C|263
7NRD|1|S2|G|264
7NRD|1|S2|A|265
7NRD|1|S2|A|266
7NRD|1|S2|U|267
*
7NRD|1|S2|A|288
7NRD|1|S2|U|289
7NRD|1|S2|G|290
7NRD|1|S2|G|291
7NRD|1|S2|U|292
7NRD|1|S2|U|293
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
Coloring options: