J5_7NRD_010
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- ACUUUGGGC*GCCUUUCCU*ACUUU*AUAGAAUAGG*UGAU
- Length
- 37 nucleotides
- Bulged bases
- 7NRD|1|S2|U|639, 7NRD|1|S2|U|640, 7NRD|1|S2|G|641, 7NRD|1|S2|C|696, 7NRD|1|S2|C|697, 7NRD|1|S2|U|813, 7NRD|1|S2|G|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|S2|A|636
7NRD|1|S2|C|637
7NRD|1|S2|U|638
7NRD|1|S2|U|639
7NRD|1|S2|U|640
7NRD|1|S2|G|641
7NRD|1|S2|G|642
7NRD|1|S2|G|643
7NRD|1|S2|C|644
*
7NRD|1|S2|G|690
7NRD|1|S2|C|691
7NRD|1|S2|C|692
7NRD|1|S2|U|693
7NRD|1|S2|U|694
7NRD|1|S2|U|695
7NRD|1|S2|C|696
7NRD|1|S2|C|697
7NRD|1|S2|U|698
*
7NRD|1|S2|A|740
7NRD|1|S2|C|741
7NRD|1|S2|U|742
7NRD|1|S2|U|743
7NRD|1|S2|U|744
*
7NRD|1|S2|A|807
7NRD|1|S2|U|808
7NRD|1|S2|A|809
7NRD|1|S2|G|810
7NRD|1|S2|A|811
7NRD|1|S2|A|812
7NRD|1|S2|U|813
7NRD|1|S2|A|814
7NRD|1|S2|G|815
7NRD|1|S2|G|816
*
7NRD|1|S2|U|857
7NRD|1|S2|G|858
7NRD|1|S2|A|859
7NRD|1|S2|U|860
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain SU
- 40S ribosomal protein S7-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
Coloring options: