J5_7NSI_003
3D structure
- PDB id
- 7NSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 7NSI|1|BA|U|1071, 7NSI|1|BA|G|1252, 7NSI|1|BA|G|1253, 7NSI|1|BA|A|1254, 7NSI|1|BA|A|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NSI_003 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.3271
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NSI|1|BA|U|1069
7NSI|1|BA|U|1070
7NSI|1|BA|U|1071
7NSI|1|BA|A|1072
*
7NSI|1|BA|U|1143
7NSI|1|BA|U|1144
7NSI|1|BA|C|1145
7NSI|1|BA|G|1146
*
7NSI|1|BA|C|1158
7NSI|1|BA|U|1159
*
7NSI|1|BA|A|1181
7NSI|1|BA|G|1182
*
7NSI|1|BA|C|1251
7NSI|1|BA|G|1252
7NSI|1|BA|G|1253
7NSI|1|BA|A|1254
7NSI|1|BA|A|1255
7NSI|1|BA|C|1256
7NSI|1|BA|A|1257
7NSI|1|BA|A|1258
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain AV
- tRNA (P/E)
- Chain B0
- 39S ribosomal protein L27, mitochondrial
- Chain B1
- 39S ribosomal protein L28, mitochondrial
- Chain B8
- 39S ribosomal protein L35, mitochondrial
- Chain BD
- Ribosomal_L2_C domain-containing protein
- Chain BP
- 39S ribosomal protein L15, mitochondrial
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