J5_7NWG_002

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAG*CGCAAUGAAGGUGAAG*CGAG*CGGCC*GAGCACGAG

Length

38 nucleotides

Bulged bases

7NWG|1|51|U|1395, 7NWG|1|51|A|1497, 7NWG|1|51|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|1352
7NWG|1|51|G|1353
7NWG|1|51|A|1354
7NWG|1|51|G|1355
*
7NWG|1|51|C|1384
7NWG|1|51|G|1385
7NWG|1|51|C|1386
7NWG|1|51|A|1387
7NWG|1|51|A|1388
7NWG|1|51|U|1389
7NWG|1|51|G|1390
7NWG|1|51|A|1391
7NWG|1|51|A|1392
7NWG|1|51|G|1393
7NWG|1|51|G|1394
7NWG|1|51|U|1395
7NWG|1|51|G|1396
7NWG|1|51|A|1397
7NWG|1|51|A|1398
7NWG|1|51|G|1399
*
7NWG|1|51|C|1418
7NWG|1|51|G|1419
7NWG|1|51|A|1420
7NWG|1|51|G|1421
*
7NWG|1|51|C|1464
7NWG|1|51|G|1465
7NWG|1|51|G|1466
7NWG|1|51|C|1467
7NWG|1|51|C|1468
*
7NWG|1|51|G|1496
7NWG|1|51|A|1497
7NWG|1|51|G|1498
7NWG|1|51|C|1499
7NWG|1|51|A|1500
7NWG|1|51|C|1501
7NWG|1|51|G|1502
7NWG|1|51|A|1503
7NWG|1|51|G|1504

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

L13

Chain Q3

L18

Chain a3

uL15

Chain b3

eL29

Chain i3

60S ribosomal protein L36