Loop J5_7NWG

3D structure

PDB id: 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: GGGAAGUCGGCAAGCCGG*UG*UG*CGGACCAGGGG*CCCACUGUCC
Length: 43 nucleotides
Bulged bases: 7NWG|1|51|A|2850, 7NWG|1|51|G|3620, 7NWG|1|51|G|3625
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7NWG|1|51|G|2846
7NWG|1|51|G|2847
7NWG|1|51|G|2848
7NWG|1|51|A|2849
7NWG|1|51|A|2850
7NWG|1|51|G|2851
7NWG|1|51|U|2852
7NWG|1|51|C|2853
7NWG|1|51|G|2854
7NWG|1|51|G|2855
7NWG|1|51|C|2856
7NWG|1|51|A|2857
7NWG|1|51|A|2858
7NWG|1|51|G|2859
7NWG|1|51|C|2860
7NWG|1|51|C|2861
7NWG|1|51|G|2862
7NWG|1|51|G|2863
*
7NWG|1|51|U|2887
7NWG|1|51|G|2888
*
7NWG|1|51|U|3613
7NWG|1|51|G|3614
*
7NWG|1|51|C|3618
7NWG|1|51|G|3619
7NWG|1|51|G|3620
7NWG|1|51|A|3621
7NWG|1|51|C|3622
7NWG|1|51|C|3623
7NWG|1|51|A|3624
7NWG|1|51|G|3625
7NWG|1|51|G|3626
7NWG|1|51|G|3627
7NWG|1|51|G|3628
*
7NWG|1|51|C|3833
7NWG|1|51|C|3834
7NWG|1|51|C|3835
7NWG|1|51|A|3836
7NWG|1|51|C|3837
7NWG|1|51|U|3838
7NWG|1|51|G|3839
7NWG|1|51|U|3840
7NWG|1|51|C|3841
7NWG|1|51|C|3842

Current chains

Chain 51: 28S Ribosomal RNA

Nearby chains

Chain A2: Small subunit ribosomal RNA; SSU rRNA
Chain B3: uL3
Chain J2: 40S ribosomal protein S8
Chain R3: 60S ribosomal protein L19
Chain V3: eL14
Chain W: 60S ribosomal protein L24-like protein

J5_7NWG_004