J5_7NWG_008

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

39 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|C|30
7NWG|1|A2|U|31
7NWG|1|A2|U|32
7NWG|1|A2|G|33
7NWG|1|A2|U|34
7NWG|1|A2|C|35
7NWG|1|A2|U|36
*
7NWG|1|A2|A|519
7NWG|1|A2|A|520
7NWG|1|A2|A|521
7NWG|1|A2|A|522
7NWG|1|A2|A|523
7NWG|1|A2|U|524
7NWG|1|A2|A|525
7NWG|1|A2|A|526
7NWG|1|A2|C|527
*
7NWG|1|A2|G|558
7NWG|1|A2|G|559
7NWG|1|A2|A|560
7NWG|1|A2|A|561
7NWG|1|A2|U|562
7NWG|1|A2|G|563
7NWG|1|A2|A|564
7NWG|1|A2|G|565
*
7NWG|1|A2|C|585
7NWG|1|A2|G|586
7NWG|1|A2|A|587
7NWG|1|A2|G|588
7NWG|1|A2|G|589
7NWG|1|A2|A|590
7NWG|1|A2|U|591
7NWG|1|A2|C|592
7NWG|1|A2|C|593
7NWG|1|A2|A|594
7NWG|1|A2|U|595
*
7NWG|1|A2|A|641
7NWG|1|A2|U|642
7NWG|1|A2|A|643
7NWG|1|A2|G|644

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain K2

40S ribosomal protein S9

Chain Y2

Ribosomal protein S23

Chain Z2

40S ribosomal protein S24

Chain f2

40S ribosomal protein S30