J5_7NWG_009

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGCUCG*CGGGCG*CGUG*CCG*CGACC

Length

26 nucleotides

Bulged bases

7NWG|1|A2|G|126, 7NWG|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|G|123
7NWG|1|A2|U|124
7NWG|1|A2|C|125
7NWG|1|A2|G|126
7NWG|1|A2|C|127
7NWG|1|A2|U|128
7NWG|1|A2|C|129
7NWG|1|A2|G|130
*
7NWG|1|A2|C|182
7NWG|1|A2|G|183
7NWG|1|A2|G|184
7NWG|1|A2|G|185
7NWG|1|A2|C|186
7NWG|1|A2|G|187
*
7NWG|1|A2|C|212
7NWG|1|A2|G|213
7NWG|1|A2|U|214
7NWG|1|A2|G|215
*
7NWG|1|A2|C|310
7NWG|1|A2|C|311
7NWG|1|A2|G|312
*
7NWG|1|A2|C|337
7NWG|1|A2|G|338
7NWG|1|A2|A|339
7NWG|1|A2|C|340
7NWG|1|A2|C|341

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain H2

40S ribosomal protein S6

Chain J2

40S ribosomal protein S8