J5_7NWH_010
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7NWH|1|9|U|55, 7NWH|1|9|A|92, 7NWH|1|9|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NWH_010 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.1475
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NWH|1|9|C|53
7NWH|1|9|A|54
7NWH|1|9|U|55
7NWH|1|9|G|56
*
7NWH|1|9|C|89
7NWH|1|9|G|90
7NWH|1|9|A|91
7NWH|1|9|A|92
7NWH|1|9|U|93
7NWH|1|9|G|94
7NWH|1|9|G|95
7NWH|1|9|C|96
*
7NWH|1|9|G|434
7NWH|1|9|A|435
7NWH|1|9|G|436
*
7NWH|1|9|C|457
7NWH|1|9|A|458
7NWH|1|9|C|459
*
7NWH|1|9|G|470
7NWH|1|9|G|471
7NWH|1|9|C|472
7NWH|1|9|A|473
7NWH|1|9|G|474
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain JJ
- 40S ribosomal protein S9
- Chain V
- eL14
- Chain YY
- 40S ribosomal protein S24
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
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