J5_7NWI_002
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 7NWI|1|5|C|2289, 7NWI|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NWI_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1985
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWI|1|5|G|1335
7NWI|1|5|G|1336
7NWI|1|5|A|1337
7NWI|1|5|G|1338
7NWI|1|5|U|1339
7NWI|1|5|C|1340
*
7NWI|1|5|G|1516
7NWI|1|5|G|1517
7NWI|1|5|A|1518
7NWI|1|5|C|1519
*
7NWI|1|5|G|1658
7NWI|1|5|U|1659
7NWI|1|5|U|1660
7NWI|1|5|C|1661
*
7NWI|1|5|G|2288
7NWI|1|5|C|2289
7NWI|1|5|C|2290
*
7NWI|1|5|G|2345
7NWI|1|5|C|2346
7NWI|1|5|A|2347
7NWI|1|5|G|2348
7NWI|1|5|A|2349
7NWI|1|5|U|2350
7NWI|1|5|C|2351
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- L13
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
Coloring options: