J5_7NWW_004

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7NWW|1|1|U|1758, 7NWW|1|1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NWW_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0593

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NWW|1|1|G|1674
7NWW|1|1|C|1675
7NWW|1|1|A|1676
7NWW|1|1|A|1677
7NWW|1|1|A|1678
7NWW|1|1|A|1679
7NWW|1|1|U|1680
7NWW|1|1|G|1681
7NWW|1|1|G|1682
*
7NWW|1|1|C|1706
7NWW|1|1|G|1707
*
7NWW|1|1|U|1751
7NWW|1|1|C|1752
*
7NWW|1|1|G|1756
7NWW|1|1|A|1757
7NWW|1|1|U|1758
7NWW|1|1|A|1759
7NWW|1|1|C|1760
7NWW|1|1|C|1761
7NWW|1|1|A|1762
7NWW|1|1|G|1763
7NWW|1|1|C|1764
*
7NWW|1|1|G|1988
7NWW|1|1|G|1989
7NWW|1|1|C|1990

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L14

Chain O

50S ribosomal protein L19