3D structure

PDB id
7O19 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7O19_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0796
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7O19|1|AA|C|36
7O19|1|AA|U|37
7O19|1|AA|G|38
7O19|1|AA|G|39
*
7O19|1|AA|C|403
7O19|1|AA|G|404
7O19|1|AA|U|405
7O19|1|AA|G|406
*
7O19|1|AA|C|436
7O19|1|AA|U|437
7O19|1|AA|U|438
7O19|1|AA|U|439
7O19|1|AA|C|440
7O19|1|AA|A|441
7O19|1|AA|G|442
*
7O19|1|AA|C|492
7O19|1|AA|A|493
7O19|1|AA|G|494
7O19|1|AA|A|495
7O19|1|AA|A|496
7O19|1|AA|G|497
7O19|1|AA|A|498
7O19|1|AA|A|499
7O19|1|AA|G|500
*
7O19|1|AA|C|545
7O19|1|AA|A|546
7O19|1|AA|A|547
7O19|1|AA|G|548

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AL
30S ribosomal protein S12

Coloring options:


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