J5_7O19_002

3D structure

PDB id

7O19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O19_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0796

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7O19|1|AA|C|36
7O19|1|AA|U|37
7O19|1|AA|G|38
7O19|1|AA|G|39
*
7O19|1|AA|C|403
7O19|1|AA|G|404
7O19|1|AA|U|405
7O19|1|AA|G|406
*
7O19|1|AA|C|436
7O19|1|AA|U|437
7O19|1|AA|U|438
7O19|1|AA|U|439
7O19|1|AA|C|440
7O19|1|AA|A|441
7O19|1|AA|G|442
*
7O19|1|AA|C|492
7O19|1|AA|A|493
7O19|1|AA|G|494
7O19|1|AA|A|495
7O19|1|AA|A|496
7O19|1|AA|G|497
7O19|1|AA|A|498
7O19|1|AA|A|499
7O19|1|AA|G|500
*
7O19|1|AA|C|545
7O19|1|AA|A|546
7O19|1|AA|A|547
7O19|1|AA|G|548

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12