7O19 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7O19_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_7O19_002 | 1/AA/83:86 | No text annotation | ||
| HL_7O19_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_7O19_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_7O19_005 | 1/AA/207:212 | UNCG | homologous HL_5J7L_005 NA | |
| HL_7O19_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_7O19_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_7O19_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_7O19_009 | 1/AA/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_7O19_010 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_7O19_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_7O19_012 | 1/AA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_7O19_107 | 1/AA/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.1 | |
| HL_7O19_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_7O19_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_7O19_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_7O19_017 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_7O19_018 | 1/AA/840:846 | No text annotation | ||
| HL_7O19_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_7O19_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_7O19_021 | 1/AA/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_7O19_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_7O19_023 | 1/AA/1028:1033 | UNCG | geometric HL_5J7L_171 NA | |
| HL_7O19_024 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_7O19_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_7O19_026 | 1/AA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_92935.1 | |
| HL_7O19_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_7O19_028 | 1/AA/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_7O19_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
| HL_7O19_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_7O19_031 | 1/AA/1449:1454 | UNCG | homologous HL_4LFB_031 HL_61337.1 | |
| HL_7O19_032 | 1/AA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_7O19_033 | 1/B8/13:22 | tRNA D-loop | homologous HL_1QF6_001 NA | |
| HL_7O19_034 | 1/B8/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_7O19_035 | 1/B8/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_33597.1 | |
| HL_7O19_036 | 1/BA/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_7O19_037 | 1/BA/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_7O19_038 | 1/BA/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_7O19_039 | 1/BA/137:142 | UNCG | geometric HL_4LFB_031 HL_61337.1 | |
| HL_7O19_040 | 1/BA/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_7O19_041 | 1/BA/194:201 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_7O19_042 | 1/BA/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_7O19_043 | 1/BA/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_7O19_044 | 1/BA/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.1 | |
| HL_7O19_045 | 1/BA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_7O19_046 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_7O19_047 | 1/BA/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_7O19_048 | 1/BA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_7O19_049 | 1/BA/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_7O19_050 | 1/BA/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_7O19_051 | 1/BA/544:549 | No text annotation | ||
| HL_7O19_052 | 1/BA/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_7O19_053 | 1/BA/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_7O19_054 | 1/BA/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_7O19_055 | 1/BA/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_7O19_056 | 1/BA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_7O19_057 | 1/BA/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_7O19_058 | 1/BA/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_7O19_059 | 1/BA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7O19_060 | 1/BA/882:894 | No text annotation | ||
| HL_7O19_108 | 1/BA/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_7O19_062 | 1/BA/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7O19_063 | 1/BA/1064:1074 | No text annotation | homologous HL_5J7L_161 NA | |
| HL_7O19_064 | 1/BA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_7O19_065 | 1/BA/1171:1178 | No text annotation | ||
| HL_7O19_066 | 1/BA/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_7O19_067 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_7O19_068 | 1/BA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_7O19_069 | 1/BA/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7O19_070 | 1/BA/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_7O19_071 | 1/BA/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_7O19_072 | 1/BA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_7O19_073 | 1/BA/1533:1538 | UNCG | homologous HL_5J7L_171 NA | |
| HL_7O19_074 | 1/BA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_7O19_075 | 1/BA/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_7O19_076 | 1/BA/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7O19_077 | 1/BA/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7O19_078 | 1/BA/1728:1731 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_7O19_079 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7O19_080 | 1/BA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_7O19_081 | 1/BA/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_7O19_082 | 1/BA/1868:1873 | GNRA | geometric HL_2OIU_001 HL_34789.1 | |
| HL_7O19_083 | 1/BA/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_7O19_084 | 1/BA/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_7O19_085 | 1/BA/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_7O19_086 | 1/BA/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_7O19_087 | 1/BA/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_7O19_088 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_7O19_089 | 1/BA/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_7O19_109 | 1/BA/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_7O19_091 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_7O19_092 | 1/BA/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_7O19_093 | 1/BA/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_7O19_094 | 1/BA/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_7O19_095 | 1/BA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_7O19_096 | 1/BA/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_7O19_097 | 1/BA/2551:2557 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_7O19_098 | 1/BA/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_7O19_099 | 1/BA/2658:2663 | GNRA | geometric HL_7A0S_063 HL_34789.1 | |
| HL_7O19_100 | 1/BA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_7O19_101 | 1/BA/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_7O19_102 | 1/BA/2796:2799 | No text annotation | geometric HL_6U8D_003 HL_32346.5 | |
| HL_7O19_103 | 1/BA/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_7O19_104 | 1/BA/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_7O19_110 | 1/BB/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_7O19_105 | 1/BB/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_7O19_106 | 1/BB/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7O19_013 | No text annotation | ||
| HL_7O19_061 | No text annotation | ||
| HL_7O19_090 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7O19_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_7O19_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_7O19_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_7O19_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_7O19_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_7O19_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_7O19_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_7O19_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G | geometric IL_5DEA_002 NA | |
| IL_7O19_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_7O19_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_7O19_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_7O19_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_7O19_013 | 1/AA/203:206, 1/AA/213:214 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7O19_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_7O19_015 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_7O19_016 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_7O19_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_7O19_018 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_7O19_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7O19_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_7O19_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_7O19_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_7O19_023 | 1/AA/450:454, 1/AA/477:483 | No text annotation | ||
| IL_7O19_197 | 1/AA/455:458, 1/AA/474:476 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_7O19_026 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | geometric IL_4LFB_020 IL_11411.1 | |
| IL_7O19_027 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_7O19_028 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_7O19_029 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_7O19_030 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_7O19_031 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_7O19_032 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_7O19_033 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_7O19_034 | 1/AA/658:659, 1/AA/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_7O19_035 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_7O19_186 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_7O19_037 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_7O19_038 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7O19_039 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_7O19_040 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_7O19_041 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_7O19_042 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_7O19_043 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_7O19_044 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_7O19_045 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_7O19_046 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_7O19_047 | 1/AA/1008:1011, 1/AA/1018:1020 | No text annotation | ||
| IL_7O19_048 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_7O19_050 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_7O19_051 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_7O19_052 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_7O19_053 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_7O19_054 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_7O19_055 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_7O19_056 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_7O19_057 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_7O19_058 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_7O19_059 | 1/AA/1259:1263, 1/AA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_7O19_060 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | homologous IL_5J7L_057 NA | |
| IL_7O19_061 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_7O19_062 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7O19_187 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_7O19_188 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_7O19_064 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_7O19_065 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_7O19_066 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_7O19_067 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_7O19_068 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_7O19_069 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_7O19_070 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7O19_071 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_7O19_072 | 1/BA/81:85, 1/BA/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_7O19_073 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_7O19_074 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_7O19_075 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_7O19_076 | 1/BA/269:271, 1/BA/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_7O19_077 | 1/BA/274:281, 1/BA/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_7O19_078 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_7O19_079 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_7O19_080 | 1/BA/536:539, 1/BA/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_7O19_081 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_7O19_082 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_7O19_083 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_7O19_084 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_7O19_085 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_7O19_086 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_7O19_087 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_7O19_088 | 1/BA/738:740, 1/BA/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_7O19_089 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_7O19_090 | 1/BA/844:847, 1/BA/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_7O19_189 | 1/BA/844:848, 1/BA/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_7O19_091 | 1/BA/847:848, 1/BA/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_7O19_092 | 1/BA/850:851, 1/BA/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_7O19_093 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_7O19_094 | 1/BA/862:863, 1/BA/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_7O19_095 | 1/BA/864:868, 1/BA/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_7O19_096 | 1/BA/870:872, 1/BA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_7O19_097 | 1/BA/875:879, 1/BA/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_7O19_098 | 1/BA/880:881, 1/BA/895:897 | Minor groove platform | geometric IL_7A0S_003 IL_34520.1 | |
| IL_7O19_099 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7O19_100 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_7O19_101 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_7O19_102 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_7O19_103 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_7O19_104 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7O19_105 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_7O19_106 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_7O19_107 | 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_7O19_108 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_28482.1 | |
| IL_7O19_109 | 1/BA/1087:1091, 1/BA/1100:1102 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.1 | |
| IL_7O19_110 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_7O19_111 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_7O19_112 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_7O19_113 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7O19_114 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
| IL_7O19_115 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_7O19_116 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_7O19_117 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_7O19_118 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_7O19_119 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_7O19_120 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_7O19_121 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_7O19_122 | 1/BA/1450:1451, 1/BA/1459:1461 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_7O19_123 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_7O19_124 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_7O19_125 | 1/BA/1481:1482, 1/BA/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_7O19_126 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_7O19_127 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_7O19_128 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_7O19_129 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_7O19_130 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_7O19_190 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7O19_131 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_7O19_132 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_7O19_133 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_7O19_134 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_7O19_135 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C | homologous IL_5J7L_311 NA | |
| IL_7O19_136 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_14190.1 | |
| IL_7O19_137 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_7O19_138 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_7O19_139 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_7O19_140 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_7O19_191 | 1/BA/1851:1860, 1/BA/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_7O19_141 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_7O19_142 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_7O19_143 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_7O19_144 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_7O19_145 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_7O19_192 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_97561.1 | |
| IL_7O19_148 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7O19_149 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_7O19_150 | 1/BA/2085:2087, 1/BA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_7O19_198 | 1/BA/2103:2105, 1/BA/2184:2186 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_7O19_152 | 1/BA/2108:2110, 1/BA/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_68118.1 | |
| IL_7O19_153 | 1/BA/2110:2121, 1/BA/2177:2179 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_7O19_154 | 1/BA/2123:2127, 1/BA/2161:2175 | No text annotation | ||
| IL_7O19_155 | 1/BA/2129:2136, 1/BA/2155:2159 | Kink-turn | homologous IL_5J7L_330 NA | |
| IL_7O19_156 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_7O19_157 | 1/BA/2297:2299, 1/BA/2317:2321 | No text annotation | geometric IL_5J7L_332 NA | |
| IL_7O19_158 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_7O19_159 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_7O19_193 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | homologous IL_5J7L_391 NA | |
| IL_7O19_194 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_5J7L_392 NA | |
| IL_7O19_195 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_7O19_162 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 NA | |
| IL_7O19_163 | 1/BA/2466:2470, 1/BA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_7O19_196 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_7O19_165 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_7O19_166 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_7O19_167 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_7O19_169 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7O19_170 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_7O19_171 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.5 | |
| IL_7O19_172 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_7O19_173 | 1/BA/2687:2691, 1/BA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_7O19_174 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_7O19_175 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_7O19_176 | 1/BA/2795:2796, 1/BA/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_14190.1 | |
| IL_7O19_177 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_7O19_178 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_7O19_179 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_7O19_180 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_7O19_181 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_7O19_182 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_7O19_183 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_7O19_184 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 NA | |
| IL_7O19_185 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7O19_024 | No text annotation | ||
| IL_7O19_025 | Isolated non-canonical cWW pair | ||
| IL_7O19_036 | No text annotation | ||
| IL_7O19_049 | No text annotation | ||
| IL_7O19_063 | Partly complementary | ||
| IL_7O19_146 | No text annotation | ||
| IL_7O19_147 | Isolated non-canonical cWW pair | ||
| IL_7O19_151 | Other IL | ||
| IL_7O19_160 | No text annotation | ||
| IL_7O19_161 | Major groove platform with extra pair | ||
| IL_7O19_164 | No text annotation | ||
| IL_7O19_168 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7O19_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_7O19_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_7O19_027 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_7O19_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_7O19_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_7O19_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_7O19_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_7O19_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_7O19_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_7O19_028 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_7O19_029 | 1/AA/1003:1008, 1/AA/1020:1028, 1/AA/1033:1037 | No text annotation | ||
| J3_7O19_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7O19_030 | 1/AA/1073:1074, 1/AA/1083:1086, 1/AA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_7O19_011 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_7O19_031 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_7O19_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_7O19_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_7O19_032 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_7O19_033 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_7O19_014 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_7O19_034 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_7O19_015 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7O19_016 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7O19_017 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_37832.1 | |
| J3_7O19_018 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_7O19_019 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_7O19_020 | 1/BA/1344:1349, 1/BA/1382:1385, 1/BA/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_7O19_035 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_7O19_021 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_7O19_036 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7O19_022 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_7O19_037 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_7O19_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_7O19_024 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_7O19_025 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_7O19_026 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_7O19_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_7O19_002 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_7O19_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_7O19_004 | 1/B8/7:10, 1/B8/25:27, 1/B8/43:49, 1/B8/65:66 | tRNA junction | homologous J4_9DFC_015 NA | |
| J4_7O19_005 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_7O19_006 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_7O19_007 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_7O19_008 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_7O19_009 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_7O19_010 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_7O19_011 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_7O19_012 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_7O19_013 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_7O19_014 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_7O19_015 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_7O19_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_7O19_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_7O19_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_7O19_004 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_7O19_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_7O19_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_7O19_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_7O19_008 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2506, 1/BA/2583:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_7O19_009 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_7O19_001 | 1/BA/45:46, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_7O19_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J7_7O19_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2789, 1/BA/2894:2895 | No text annotation | ||
| J7_7O19_002 | 1/BA/817:822, 1/BA/835:838, 1/BA/940:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7O19_010 | No text annotation |
Coloring options: