J5_7O19_004

3D structure

PDB id

7O19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7O19|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O19_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0512

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7O19|1|BA|C|47
7O19|1|BA|G|48
7O19|1|BA|A|49
7O19|1|BA|U|50
7O19|1|BA|G|51
7O19|1|BA|A|52
7O19|1|BA|A|53
7O19|1|BA|G|54
*
7O19|1|BA|C|116
7O19|1|BA|G|117
7O19|1|BA|A|118
7O19|1|BA|A|119
7O19|1|BA|U|120
7O19|1|BA|G|121
*
7O19|1|BA|C|130
7O19|1|BA|A|131
*
7O19|1|BA|U|148
7O19|1|BA|A|149
7O19|1|BA|U|150
*
7O19|1|BA|A|176
7O19|1|BA|G|177
7O19|1|BA|G|178

Current chains

Chain BA

Ribosomal RNA 23S

Nearby chains

Chain B2

50S ribosomal protein L34