J5_7O80_005
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGG*CGU*AUGG*CCGCG*CU
- Length
- 18 nucleotides
- Bulged bases
- 7O80|1|AT|U|8, 7O80|1|AT|C|58
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O80|1|AT|A|7
7O80|1|AT|U|8
7O80|1|AT|G|9
7O80|1|AT|G|10
*
7O80|1|AT|C|25
7O80|1|AT|G|26
7O80|1|AT|U|27
*
7O80|1|AT|A|43
7O80|1|AT|U|44
7O80|1|AT|G|45
7O80|1|AT|G|46
*
7O80|1|AT|C|55
7O80|1|AT|C|56
7O80|1|AT|G|57
7O80|1|AT|C|58
7O80|1|AT|G|59
*
7O80|1|AT|C|75
7O80|1|AT|U|76
Current chains
- Chain AT
- P-site Leu-tRNA(Leu)
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ay
- 40S ribosomal protein S25
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 60S ribosomal protein L10
- Chain BJ
- Ribosomal protein L11
- Chain By
- Eukaryotic peptide chain release factor subunit 1
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