J5_7O80_007

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)

Length

24 nucleotides

Bulged bases

7O80|1|B5|C|2132, 7O80|1|B5|U|2193

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O80_007 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0712

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7O80|1|B5|G|1279
7O80|1|B5|G|1280
7O80|1|B5|A|1281
7O80|1|B5|G|1282
7O80|1|B5|U|1283
7O80|1|B5|OMC|1284
*
7O80|1|B5|G|1471
7O80|1|B5|G|1472
7O80|1|B5|A|1473
7O80|1|B5|C|1474
*
7O80|1|B5|G|1613
7O80|1|B5|U|1614
7O80|1|B5|U|1615
7O80|1|B5|C|1616
*
7O80|1|B5|G|2131
7O80|1|B5|C|2132
7O80|1|B5|C|2133
*
7O80|1|B5|G|2188
7O80|1|B5|C|2189
7O80|1|B5|A|2190
7O80|1|B5|G|2191
7O80|1|B5|A|2192
7O80|1|B5|U|2193
7O80|1|B5|OMC|2194

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L4

Chain BL

Ribosomal protein eL13

Chain BN

Ribosomal protein L15

Chain Ba

60S ribosomal protein L27a

Chain Be

eL32

Chain Br

Ribosomal protein eL28