J5_7O80_010

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA

Length

19 nucleotides

Bulged bases

7O80|1|B5|G|3654, 7O80|1|B5|A|4122, 7O80|1|B5|G|4123, 7O80|1|B5|A|4124, 7O80|1|B5|A|4125

QA status

Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O80_010 not in the Motif Atlas

Homologous match to J5_8P9A_015

Geometric discrepancy: 0.3391

The information below is about J5_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_96125.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7O80|1|B5|PSU|3652
7O80|1|B5|U|3653
7O80|1|B5|G|3654
7O80|1|B5|A|3655
*
7O80|1|B5|U|3934
7O80|1|B5|U|3935
7O80|1|B5|U|3936
7O80|1|B5|G|3937
*
7O80|1|B5|C|3950
7O80|1|B5|A|3951
*
7O80|1|B5|OMU|3973
7O80|1|B5|OMG|3974
*
7O80|1|B5|C|4121
7O80|1|B5|A|4122
7O80|1|B5|G|4123
7O80|1|B5|A|4124
7O80|1|B5|A|4125
7O80|1|B5|A|4126
7O80|1|B5|A|4127

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain AT

Transfer RNA; tRNA

Chain BA

Ribosomal protein uL2

Chain BN

Ribosomal protein L15

Chain BQ

Ribosomal protein L18

Chain BT

eL21

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42