J5_7O81_005
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 7O81|1|B8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O81_005 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1152
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|G|19
7O81|1|B5|U|20
7O81|1|B5|G|21
*
7O81|1|B8|C|35
7O81|1|B8|G|36
7O81|1|B8|A|37
7O81|1|B8|U|38
7O81|1|B8|G|39
7O81|1|B8|A|40
7O81|1|B8|A|41
7O81|1|B8|G|42
*
7O81|1|B8|C|101
7O81|1|B8|G|102
7O81|1|B8|A|103
7O81|1|B8|A|104
7O81|1|B8|C|105
7O81|1|B8|G|106
*
7O81|1|B8|C|113
7O81|1|B8|G|114
*
7O81|1|B8|U|136
7O81|1|B8|A|137
7O81|1|B8|C|138
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BN
- Ribosomal protein L15
- Chain BX
- uL23
- Chain Bh
- uL29
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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