J5_7OF5_004

3D structure

PDB id

7OF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUA*UUCG*CU*AG*CGGAACAA

Length

20 nucleotides

Bulged bases

7OF5|1|A|U|2739, 7OF5|1|A|G|2916, 7OF5|1|A|G|2917, 7OF5|1|A|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OF5_004 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.3175

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7OF5|1|A|U|2737
7OF5|1|A|U|2738
7OF5|1|A|U|2739
7OF5|1|A|A|2740
*
7OF5|1|A|U|2807
7OF5|1|A|U|2808
7OF5|1|A|C|2809
7OF5|1|A|G|2810
*
7OF5|1|A|C|2822
7OF5|1|A|U|2823
*
7OF5|1|A|A|2845
7OF5|1|A|G|2846
*
7OF5|1|A|C|2915
7OF5|1|A|G|2916
7OF5|1|A|G|2917
7OF5|1|A|A|2918
7OF5|1|A|A|2919
7OF5|1|A|C|2920
7OF5|1|A|A|2921
7OF5|1|A|A|2922

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 3

39S ribosomal protein L35, mitochondrial

Chain C

5-methylcytosine rRNA methyltransferase NSUN4

Chain D

39S ribosomal protein L2, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial