J5_7OHT_001
3D structure
- PDB id
- 7OHT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGCACAUC*GAUGUCCUAAG*UUGAU*AC*GGC
- Length
- 29 nucleotides
- Bulged bases
- 7OHT|1|1|A|2649, 7OHT|1|1|C|2653
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OHT|1|1|G|2623
7OHT|1|1|G|2624
7OHT|1|1|C|2625
7OHT|1|1|A|2626
7OHT|1|1|C|2627
7OHT|1|1|A|2628
7OHT|1|1|U|2629
7OHT|1|1|C|2630
*
7OHT|1|1|G|2648
7OHT|1|1|A|2649
7OHT|1|1|U|2650
7OHT|1|1|G|2651
7OHT|1|1|U|2652
7OHT|1|1|C|2653
7OHT|1|1|C|2654
7OHT|1|1|U|2655
7OHT|1|1|A|2656
7OHT|1|1|A|2657
7OHT|1|1|G|2658
*
7OHT|1|1|U|2712
7OHT|1|1|U|2713
7OHT|1|1|G|2714
7OHT|1|1|A|2715
7OHT|1|1|U|2716
*
7OHT|1|1|A|2740
7OHT|1|1|C|2741
*
7OHT|1|1|G|2753
7OHT|1|1|G|2754
7OHT|1|1|C|2755
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
- Chain x
- Ribosome assembly protein 4
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