J5_7OHX_001

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGG*CGAUGAAG*UGAACGC*GCG*CAU

Length

24 nucleotides

Bulged bases

7OHX|1|2|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHX|1|1|A|20
7OHX|1|1|G|21
7OHX|1|1|G|22
*
7OHX|1|2|C|35
7OHX|1|2|G|36
7OHX|1|2|A|37
7OHX|1|2|U|38
7OHX|1|2|G|39
7OHX|1|2|A|40
7OHX|1|2|A|41
7OHX|1|2|G|42
*
7OHX|1|2|U|102
7OHX|1|2|G|103
7OHX|1|2|A|104
7OHX|1|2|A|105
7OHX|1|2|C|106
7OHX|1|2|G|107
7OHX|1|2|C|108
*
7OHX|1|2|G|114
7OHX|1|2|C|115
7OHX|1|2|G|116
*
7OHX|1|2|C|137
7OHX|1|2|A|138
7OHX|1|2|U|139

Current chains

Chain 1

25S rRNA

Chain 2

5.8S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A

Chain v

Nucleolar protein 16