3D structure

PDB id
7OIA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUA*UUCG*CU*AG*CGGAACAA
Length
20 nucleotides
Bulged bases
7OIA|1|A|U|1069, 7OIA|1|A|G|1246, 7OIA|1|A|G|1247, 7OIA|1|A|A|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7OIA_003 not in the Motif Atlas
Homologous match to J5_7A0S_007
Geometric discrepancy: 0.3009
The information below is about J5_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.2
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7OIA|1|A|U|1067
7OIA|1|A|U|1068
7OIA|1|A|U|1069
7OIA|1|A|A|1070
*
7OIA|1|A|U|1137
7OIA|1|A|U|1138
7OIA|1|A|C|1139
7OIA|1|A|G|1140
*
7OIA|1|A|C|1152
7OIA|1|A|U|1153
*
7OIA|1|A|A|1175
7OIA|1|A|G|1176
*
7OIA|1|A|C|1245
7OIA|1|A|G|1246
7OIA|1|A|G|1247
7OIA|1|A|A|1248
7OIA|1|A|A|1249
7OIA|1|A|C|1250
7OIA|1|A|A|1251
7OIA|1|A|A|1252

Current chains

Chain A
16S rRNA

Nearby chains

Chain 3
39S ribosomal protein L35, mitochondrial
Chain M
39S ribosomal protein L15, mitochondrial
Chain W
39S ribosomal protein L27, mitochondrial
Chain X
39S ribosomal protein L28, mitochondrial
Chain z
Transfer RNA; tRNA

Coloring options:


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