J5_7OID_004
3D structure
- PDB id
- 7OID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 7OID|1|A|U|1069, 7OID|1|A|G|1246, 7OID|1|A|G|1247, 7OID|1|A|A|1248, 7OID|1|A|A|1251
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OID_004 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.3026
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OID|1|A|U|1067
7OID|1|A|U|1068
7OID|1|A|U|1069
7OID|1|A|A|1070
*
7OID|1|A|U|1137
7OID|1|A|U|1138
7OID|1|A|C|1139
7OID|1|A|G|1140
*
7OID|1|A|C|1152
7OID|1|A|U|1153
*
7OID|1|A|A|1175
7OID|1|A|G|1176
*
7OID|1|A|C|1245
7OID|1|A|G|1246
7OID|1|A|G|1247
7OID|1|A|A|1248
7OID|1|A|A|1249
7OID|1|A|C|1250
7OID|1|A|A|1251
7OID|1|A|A|1252
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 1
- 39S ribosomal protein L33, mitochondrial
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain z
- Transfer RNA; tRNA
Coloring options: