J5_7OPE_003
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 7OPE|1|A|A|578, 7OPE|1|A|U|606
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OPE_003 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0883
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OPE|1|A|U|577
7OPE|1|A|A|578
7OPE|1|A|G|579
*
7OPE|1|A|C|604
7OPE|1|A|G|605
7OPE|1|A|U|606
7OPE|1|A|G|607
7OPE|1|A|C|608
*
7OPE|1|A|G|621
7OPE|1|A|A|622
7OPE|1|A|A|623
*
7OPE|1|A|U|1301
7OPE|1|A|A|1302
*
7OPE|1|A|U|2046
7OPE|1|A|A|2047
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L22
- Chain f
- 50S ribosomal protein L32
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