J5_7OPE_005

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

7OPE|1|A|G|1787, 7OPE|1|A|G|1792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OPE_005 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1128

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7OPE|1|A|G|1719
7OPE|1|A|C|1720
7OPE|1|A|A|1721
7OPE|1|A|A|1722
7OPE|1|A|A|1723
7OPE|1|A|A|1724
7OPE|1|A|U|1725
7OPE|1|A|G|1726
7OPE|1|A|A|1727
*
7OPE|1|A|U|1751
7OPE|1|A|G|1752
*
7OPE|1|A|C|1780
7OPE|1|A|C|1781
*
7OPE|1|A|G|1785
7OPE|1|A|U|1786
7OPE|1|A|G|1787
7OPE|1|A|A|1788
7OPE|1|A|A|1789
7OPE|1|A|U|1790
7OPE|1|A|A|1791
7OPE|1|A|G|1792
7OPE|1|A|G|1793
*
7OPE|1|A|C|2017
7OPE|1|A|A|2018
7OPE|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain O

50S ribosomal protein L14

Chain T

50S ribosomal protein L19