J5_7OSA_004
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7OSA|1|25S|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OSA_004 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0498
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OSA|1|25S|G|658
7OSA|1|25S|G|659
7OSA|1|25S|A|660
7OSA|1|25S|G|661
7OSA|1|25S|U|662
7OSA|1|25S|C|663
*
7OSA|1|25S|G|799
7OSA|1|25S|G|800
7OSA|1|25S|A|801
7OSA|1|25S|C|802
*
7OSA|1|25S|G|941
7OSA|1|25S|U|942
7OSA|1|25S|U|943
7OSA|1|25S|C|944
*
7OSA|1|25S|G|1375
7OSA|1|25S|C|1376
*
7OSA|1|25S|G|1431
7OSA|1|25S|C|1432
7OSA|1|25S|A|1433
7OSA|1|25S|G|1434
7OSA|1|25S|A|1435
7OSA|1|25S|U|1436
7OSA|1|25S|C|1437
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain eL13
- 60S ribosomal protein L13
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL32
- HN1_G0013350.mRNA.1.CDS.1
- Chain uL15
- 60S ribosomal protein L28
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: