J5_7OSA_007

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

7OSA|1|25S|A|2404, 7OSA|1|25S|A|2817, 7OSA|1|25S|U|2873, 7OSA|1|25S|G|2874, 7OSA|1|25S|U|2978, 7OSA|1|25S|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSA|1|25S|A|2399
7OSA|1|25S|G|2400
7OSA|1|25S|A|2401
7OSA|1|25S|A|2402
7OSA|1|25S|G|2403
7OSA|1|25S|A|2404
7OSA|1|25S|C|2405
7OSA|1|25S|C|2406
*
7OSA|1|25S|G|2815
7OSA|1|25S|G|2816
7OSA|1|25S|A|2817
7OSA|1|25S|U|2818
7OSA|1|25S|A|2819
7OSA|1|25S|A|2820
7OSA|1|25S|C|2821
7OSA|1|25S|U|2822
7OSA|1|25S|G|2823
*
7OSA|1|25S|C|2867
7OSA|1|25S|U|2868
7OSA|1|25S|U|2869
7OSA|1|25S|C|2870
7OSA|1|25S|G|2871
7OSA|1|25S|A|2872
7OSA|1|25S|U|2873
7OSA|1|25S|G|2874
7OSA|1|25S|U|2875
7OSA|1|25S|C|2876
*
7OSA|1|25S|G|2951
7OSA|1|25S|G|2952
7OSA|1|25S|U|2953
7OSA|1|25S|U|2954
7OSA|1|25S|U|2955
7OSA|1|25S|A|2956
7OSA|1|25S|G|2957
*
7OSA|1|25S|U|2975
7OSA|1|25S|A|2976
7OSA|1|25S|G|2977
7OSA|1|25S|U|2978
7OSA|1|25S|U|2979
7OSA|1|25S|U|2980

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL29

60S ribosomal protein L29

Chain uL15

60S ribosomal protein L28

Chain uL2

60S ribosomal protein L2-B

Chain uL3

60S ribosomal protein L3

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1