J5_7OSM_001

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

7OSM|1|18S|A|541, 7OSM|1|18S|C|543, 7OSM|1|18S|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|18S|C|31
7OSM|1|18S|U|32
7OSM|1|18S|U|33
7OSM|1|18S|G|34
7OSM|1|18S|U|35
*
7OSM|1|18S|A|473
7OSM|1|18S|A|474
7OSM|1|18S|A|475
7OSM|1|18S|U|476
7OSM|1|18S|A|477
7OSM|1|18S|A|478
7OSM|1|18S|C|479
*
7OSM|1|18S|G|509
7OSM|1|18S|G|510
7OSM|1|18S|A|511
7OSM|1|18S|A|512
7OSM|1|18S|U|513
7OSM|1|18S|G|514
7OSM|1|18S|A|515
7OSM|1|18S|G|516
*
7OSM|1|18S|C|536
7OSM|1|18S|G|537
7OSM|1|18S|A|538
7OSM|1|18S|G|539
7OSM|1|18S|G|540
7OSM|1|18S|A|541
7OSM|1|18S|A|542
7OSM|1|18S|C|543
7OSM|1|18S|A|544
7OSM|1|18S|A|545
7OSM|1|18S|U|546
*
7OSM|1|18S|A|592
7OSM|1|18S|U|593
7OSM|1|18S|A|594
7OSM|1|18S|G|595

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS30

40S ribosomal protein S30

Chain uS12

40S ribosomal protein S23

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1